In GEANT 4.5.0, the Configure command creates a ./.config directory in the local directory. This name is generic and whould be better if it could be identified as coming from GEANT4. The current system adds files to ./.config directories that exist as part of other packages. Thanks,
The Configure script is supposed to create .config/ inside the installation area for Geant4. Therefore it is self-consistent. A fix to problem report #461 will resolve this problem as well. Thanks.